miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|18231550|gb|AV935753.1|AV935753 GTGATCCGATCTTATTTGGACGGCATAAGGCAATNAATGGGTNAAGTCGACGGCAAAGCATGCATCTGCTTATATAGTAC
TCCCTCCGTTCCTAAATATAAGACCTTTTAGAAATTACATTATAAGCTTCATACGGATGTACATAGACATATTTTATAAT
GTATAAATTCACTCATTTTGCTCCGTATGTAGTTTTCTAGTGAAAACTCTAAAAGGTCTTATATTTAGGAACCGATGGAG
TACAAACACCAACTCGCCCTTTTTTTAAACCATCACCAAGTCGCCTTTAGTAGTAGAGATGTTTTACGAACCAAACACAC
ACAAATGCAGCCGGTGATACCTACGCGCTGGCTGGAATGCTGAAAAATAATTCTTTTTGGTGGTACAACGTCTTAGTGCT
ACTGTAAACAAACGAATGACTGGACTGGCATATGAGAATTCAGATGCAACGACCTGGCAGGCACTACTATCCCTTCAAGA
GGCTGTCTCACAAAGTGGCAATCCTTCACAACCTCGCGATGACCGCTTCAACCTCTGCAGGAGTGTAGAGGTGGTAGCTG
GGGGAGACATTCGCAATGTCAACATTGTTTGGGGTCACCTTTTCTTCCATAACCTGCTTCAGGATAGAAAGGGCTATGGT
CTCTGCCTCAGCGATTGTCAATTCCTTGTTGTACTGCTCTTGTAATGAGCTATCAGC




Most similar to sp|Q9LSU1|PSA5_ORYSJ

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9LSU1|PSA5_ORYSJ Proteasome subunit alpha type-5 OS=Oryza
           sativa subsp. japonica GN=PAE1 PE=2 SV=1
          Length = 237

 Score =  116 bits (290), Expect = 2e-25
 Identities = 59/63 (93%), Positives = 61/63 (96%)
 Frame = -1

Query: 697 ADSSLQEQYNKELTIAEAETIALSILKQVMEEKVTPNNVDIANVSPSYHLYTPAEVEAVI 518
           ADSSLQEQYNKELT+ EAETIALSILKQVMEEKVTPNNVDIA VSP+YHLYTPAEVEAVI
Sbjct: 175 ADSSLQEQYNKELTLQEAETIALSILKQVMEEKVTPNNVDIAKVSPNYHLYTPAEVEAVI 234

Query: 517 ARL 509
           ARL
Sbjct: 235 ARL 237